Scientists have found a genomic deletion that affects fertility and milk yield in dairy cattle at the same time. The discovery can help explain a dilemma in dairy cattle breeding: the negative correlation between fertility and milk production.The dominance of AI, and selective breeding for milk yield has massively increased milk production in dairy breeds, but I think it has probably made the dairy cow genomes extremely susceptible to recessive mutations. I also expect that at least some of the BSE cases in the U.S. and Canada have been genetucally inherited cases, and not a result of tainted feed.
For the past many years milk yield in Scandinavian dairy cattle has gone in one clear direction: up. This has been due to targeted breeding programs and modern breeding methods. Despite putting large weight in the breeding goal in Nordic countries, almost no improvement is achieved for fertility. It now seems that this unfavorable correlation between milk yield and fertility is partially affected by a deletion of a simple gene sequence. The presence and effects of this mutation have recently been discovered by scientists from Aarhus University, University of Liège, MTT Agrifood Research Finland, in collaboration with the Danish Agricultural Advisory Service and the Nordic Cattle Genetic Evaluation.
Scientists, farmers and advisors have generally assumed that the reduction in fertility is primarily due to the negative energy balance of high-producing cows at the peak of their lactation but now the scientists have also found a genetic explanation.
"We have discovered a deletion encompassing four genes as the causative variant and shown that the deletion is a recessive embryonically lethal mutation," explains Goutam Sahana. "This means that the calves die while they are still embryos and are aborted or reported as insemination failure. The fact that the mutation is recessive means that both parents must carry it and pass the genes on to their calf for the calf to be affected. The bulls carrying the deletion can be routinely identified in on-going genomic selection program and by avoiding carrier-by-carrier matings a quantum jump in fertility could be achieved in Nordic red breeds," adds Goutam Sahana.
To make matters worse, this particular mutation has become rather common in Nordic Red cattle, however, the deletion is totally absent in Nordic Holstein and Danish Jersey populations. Based on the frequency of the mutation in the population, it is estimated that 2.89, 1.32 and 0.42% of embryos are dying in Finnish Ayshire, Swedish Red and Danish Red cattle respectively due to this mutation.
The reason that the deleted gene sequence causing embryo mortality has become relatively widespread is that it has such as strong positive effect on milk yield. By selecting for high milk yields, breeders have inadvertently also selected for embryo mortality -- a situation of so-called hitchhiking.
Wednesday, January 8, 2014
Genetic Deletion Hurts Fertility in High Milk Yield Dairy Cows
Science Daily, via Sowing Agricultural Seeds Daily:
Montana's Socialized Medicine
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Maybe it is contagious, and they caught it from their neighbors to the north:
Now, 50 years later [after Saskatchewan established the provincial Medicare program], Montana has implemented a remarkable program to provide socialized health care to state employees. They don’t call it “socialized health care,” but just put two and two together as you consider the following remarks from a story on National Public Radio from last July:Don't use the S word. The NPR story is here.
“Montana opened the first government-run medical clinic for state employees last fall. A year later, the state says the clinic is already saving money.”
Note that Montana’s experiment is not a “single-payer” insurance plan. It’s actually socialized medicine, as the NPR report makes clear without stooping so low as to use the “S” word:
“The state contracts with a private company to run the facility and pays for everything—wages of the staff, total costs of all the visits. Those are all new expenses, and they all come from the budget for state employee healthcare. Even so, division manager Russ Hill says it’s actually costing the state $1,500,000 less for healthcare than before the clinic opened.”
“Physicians are paid by the hour, not by the number of procedures they prescribe like many in the private sector. The state is able to buy supplies at lower prices. ‘Because there’s no markup, our cost per visit is lower than in a private fee-for-service environment,’ Hill says.”
“Bottom line: a patient’s visit to the employee health clinic costs the state about half what it would cost if that patient went to a private doctor. And because it’s free to patients, hundreds of people have come in who had not seen a doctor for at least two years.”
“Montana recently opened a second state employee health clinic in Billings, the state’s largest city. Others are in the works.”
Stealing the FBI's Spy Files
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What an amazing story:
Tuesday, January 7, 2014
The Danger of Metrics
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Wired:
After disruption, though, there comes at least some version of stage three: overshoot. The most common problem is that all these new systems—metrics, algorithms, automated decisionmaking processes—result in humans gaming the system in rational but often unpredictable ways. Sociologist Donald T. Campbell noted this dynamic back in the ’70s, when he articulated what’s come to be known as Campbell’s law: “The more any quantitative social indicator is used for social decision-making,” he wrote, “the more subject it will be to corruption pressures and the more apt it will be to distort and corrupt the social processes it is intended to monitor.”Amen.
On a managerial level, once the quants come into an industry and disrupt it, they often don’t know when to stop. They tend not to have decades of institutional knowledge about the field in which they have found themselves. And once they’re empowered, quants tend to create systems that favor something pretty close to cheating. As soon as managers pick a numerical metric as a way to measure whether they’re achieving their desired outcome, everybody starts maximizing that metric rather than doing the rest of their job—just as Campbell’s law predicts.
Keep an Eye on the Bull at All Times
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I broke that cardinal rule today, and I've got a beat up body to show for it. This bull has seemed much more temperamental than the last one, but I didn't thin k of that when I climbed over a six-foot wooden gate to bust a non-working tank heater out of the ice in the water trough. After pounding the ice a few times with a wood post, I was trying to pry the heater up when the bull hit me in the crotch with his head. He knocked me off balance and pinned me against the gate. Each time he pulled back to hit me again, I scrambled to get better footing. It was a little worrisome waiting while he pinned me until another instant of freedom before he struck again. Finally, I was able to scramble up the gate and get to safety. I've got to keep him a few more months to get my cows bred back, but he's worn out his welcome at the farm.
Do We Need a Bigger Congress?
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Bruce Bartlett looks at the issue:
One problem that continues to fester is that the Constitution says no state may have fewer than one House member. This means that small states such as Wyoming, Vermont and North Dakota are overrepresented in the House — and other states are underrepresented. This is a violation of the principle of one person one vote, established by the Supreme Court in the 1964 case Reynolds v. Sims.While I appreciate the idea that one person representing 729,000 people is pretty crazy, I just can't imagine how many clowns we'd end up with if we halved the size of the districts. If Jim Jordan is the best his district can offer, who else would get elected if the districts were cut in half. We could use a better class of public servants instead of more of what we've got.
A number of political scientists and legal scholars now contend that an increase in the size of the House is necessary to relieve the growing malapportionment under the fixed size of 435, the minimum representation requirement and the mathematical formula used for reapportionment. Articles making this argument have appeared in Perspectives on Politics, Polity, the Washburn Law Journal, the New York University Journal of Legislation and Public Policy and The New York Times....
In 2009, some activists brought suit in federal court challenging the constitutionality of the law freezing the number of House members at 435. But it was rejected by a Federal District Court in 2010, which said the question was a political one for Congress to decide, and the Supreme Court refused to review the case.
In closing, let me note that according to the Inter-Parliamentary Union, the House of Representatives is on the very high side of population per representative at 729,000. The population per member in the lower house of other major countries is considerably smaller: Britain and Italy, 97,000; Canada and France, 114,000; Germany, 135,000; Australia, 147,000; and Japan, 265,000.
Sunday, January 5, 2014
Does the GOP Need To Pass a Farm Bill?
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National Journal:
For the last several years, commodity prices have been so high that farmers haven't been concerned about their safety net and farm leaders have found it impossible to get their members to put on the kind of grassroots campaigns that are usually required to get a bill enacted. Those high prices have allowed Republicans, particularly in the House, to engage in an endless debate over food stamps, formally known as the Supplemental Nutrition Assistance Program, or SNAP.Personally, I don't see it being a big part of the 2014 elections. While farmers vote, there just aren't a huge number of people who actually get government money as farmers. In the end, the food stamp portion affects way more people, and that is what the Republicans really want to cut. Politically, those cuts probably won't hurt most rural Republicans, but you never can tell.
Now big crops and the Obama administration's decision to consider lowering the volumetric requirements for corn-based ethanol and biodiesel under the renewable-fuel standard have sent commodity prices plummeting and raised questions about land values. As Bloomberg has reported, corn prices in 2013 experienced their biggest one-year drop since 1960 and wheat prices dropped the most in five years. Prices haven't fallen below profitable levels yet, but farmers and their bankers now see that they need the certainty of a five-year bill, whatever its details.
Since the Democratic-controlled Senate passed a farm bill in 2012 and 2013 and the House passed it in 2013 after the most excruciating lengthy battle, there seems to be an understanding in political circles that if the conference report gets held up, rural voters will see it as the fault of the Republicans in general and the House Republicans in particular.
The evidence can already be seen in key Senate races. In December, Sen. Mark Pryor, D-Ark., said that the vote of his expected opponent, GOP Rep. Tom Cotton, against a comprehensive farm bill last June because it didn't cut food stamps enough had hurt Arkansas farmers. Pryor urged farmers to ask Cotton how he will vote on the conference report that will most certainly include both commodity programs and food stamps.
In Kentucky, Allison Lundergan Grimes, a Democrat running against Senate Minority Leader Mitch McConnell, has charged in a TV ad that Congress's slowness in passing a farm bill means "McConnell's failure to lead hurts Kentucky farmers." Grimes has also called McConnell's vote against the Senate farm bill "shameful."
McConnell, who also faces a Republican primary, justified his vote, telling reporters, "In the Senate bill, it just largely became a food-stamp bill with production agriculture kind of stuck on as an afterthought."
Sen. Tammy Baldwin, D-Wis., is not up for reelection in 2014, but she recently used the farm bill in a fundraising letter. "The failure to pass a strong farm bill could do serious damage to Wisconsin's economy and to communities all over the country who depend on family farms moving local economies forward. Tea-party obstructionists can't be allowed to play political games with America's rural economy," Baldwin wrote to her supporters.
The farm bill could also become an issue in Senate races in Georgia, Iowa, Louisiana, Montana, South Dakota, and West Virginia
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